Index of /figures/pbj_v2/


../
final/                                             16-Jul-2026 15:01                   -
panels/                                            16-Jul-2026 15:01                   -
stats/                                             16-Jul-2026 15:01                   -
CDI_three_signals.pdf                              16-Jul-2026 15:01               22904
CDI_three_signals.png                              16-Jul-2026 15:01              298144
CDI_three_track_Fst.pdf                            16-Jul-2026 15:01               25632
CDI_three_track_Fst.png                            16-Jul-2026 15:01              276693
CDI_three_track_Fst_v2.pdf                         16-Jul-2026 15:01              361468
CDI_three_track_Fst_v2.png                         16-Jul-2026 15:01              430396
FIG1_SPEC.md                                       16-Jul-2026 15:01                3026
Fig5_MFCA_Review.md                                16-Jul-2026 15:01               11700
PBJ_All_Figures_Review.md                          16-Jul-2026 15:01               13395
PBJ_Data_Audit_Report.md                           16-Jul-2026 15:01                6840
PBJ_Figures_Construction_Description.md            16-Jul-2026 15:01               14641
_v13.png                                           16-Jul-2026 15:01              957940
ct_slice_annotated_1.jpg                           16-Jul-2026 15:01               46943
ct_slice_annotated_2.jpg                           16-Jul-2026 15:01               47147
ct_slice_large_1.jpg                               16-Jul-2026 15:01               43743
ct_slice_large_2.jpg                               16-Jul-2026 15:01               42634
ct_slice_large_3.jpg                               16-Jul-2026 15:01               43974
ct_slice_large_4.jpg                               16-Jul-2026 15:01               43196
fig1_ct_panorama_v10.png                           16-Jul-2026 15:01             1597857
fig1_ct_panorama_v11.pdf                           16-Jul-2026 15:01              293019
fig1_ct_panorama_v11.png                           16-Jul-2026 15:01             1416645
fig1_ct_panorama_v12.pdf                           16-Jul-2026 15:01              321226
fig1_ct_panorama_v12.png                           16-Jul-2026 15:01             1611666
fig1_ct_panorama_v13.png                           16-Jul-2026 15:01              957940
fig1_ct_panorama_v14.pdf                           16-Jul-2026 15:01              295333
fig1_ct_panorama_v14.png                           16-Jul-2026 15:01             1426457
fig1_ct_panorama_v15.pdf                           16-Jul-2026 15:01              277982
fig1_ct_panorama_v15.png                           16-Jul-2026 15:01             1356502
fig1_ct_panorama_v16.pdf                           16-Jul-2026 15:01              270446
fig1_ct_panorama_v16.png                           16-Jul-2026 15:01             1301096
fig1_ct_panorama_v18.pdf                           16-Jul-2026 15:01              287140
fig1_ct_panorama_v18.png                           16-Jul-2026 15:01             1501318
fig1_ct_panorama_v19.pdf                           16-Jul-2026 15:01              287177
fig1_ct_panorama_v19.png                           16-Jul-2026 15:01             1501421
fig1_ct_panorama_v2.pdf                            16-Jul-2026 15:01              373496
fig1_ct_panorama_v2.png                            16-Jul-2026 15:01             1216562
fig1_ct_panorama_v20.pdf                           16-Jul-2026 15:01              300369
fig1_ct_panorama_v20.png                           16-Jul-2026 15:01             1558436
fig1_ct_panorama_v21.pdf                           16-Jul-2026 15:01              281276
fig1_ct_panorama_v21.png                           16-Jul-2026 15:01             1462039
fig1_ct_panorama_v5.pdf                            16-Jul-2026 15:01              348027
fig1_ct_panorama_v5.png                            16-Jul-2026 15:01             1842999
fig1_ct_panorama_v8.pdf                            16-Jul-2026 15:01              292592
fig1_ct_panorama_v8.png                            16-Jul-2026 15:01             1536905
fig1_ct_panorama_v9.pdf                            16-Jul-2026 15:01              293019
fig1_ct_panorama_v9.png                            16-Jul-2026 15:01             1416645
fig2_metabolomics_v10.pdf                          16-Jul-2026 15:01              189876
fig2_metabolomics_v10.png                          16-Jul-2026 15:01             1332389
fig2_metabolomics_v11.pdf                          16-Jul-2026 15:01              193923
fig2_metabolomics_v11.png                          16-Jul-2026 15:01             1436699
fig2_metabolomics_v12.pdf                          16-Jul-2026 15:01              194304
fig2_metabolomics_v12.png                          16-Jul-2026 15:01             1395728
fig2_metabolomics_v3.pdf                           16-Jul-2026 15:01               66261
fig2_metabolomics_v3.png                           16-Jul-2026 15:01              434117
fig2_metabolomics_v8.pdf                           16-Jul-2026 15:01               96814
fig2_metabolomics_v8.png                           16-Jul-2026 15:01              634497
fig2_metabolomics_v9.pdf                           16-Jul-2026 15:01              184871
fig2_metabolomics_v9.png                           16-Jul-2026 15:01             1283785
fig3_temporal_dynamics_v2.pdf                      16-Jul-2026 15:01               45084
fig3_temporal_dynamics_v2.png                      16-Jul-2026 15:01              268268
fig3_transcriptomic_canalization_v1.pdf            16-Jul-2026 15:01               30948
fig3_transcriptomic_canalization_v1.png            16-Jul-2026 15:01              160598
fig3_transcriptomics_v2.pdf                        16-Jul-2026 15:01               78866
fig3_transcriptomics_v2.png                        16-Jul-2026 15:01              347399
fig3_transcriptomics_v3.pdf                        16-Jul-2026 15:01              126208
fig3_transcriptomics_v3.png                        16-Jul-2026 15:01              818122
fig4_ct_metabolite_network_v2.pdf                  16-Jul-2026 15:01               42624
fig4_ct_metabolite_network_v2.png                  16-Jul-2026 15:01              465956
fig4_ct_metabolite_network_v3.pdf                  16-Jul-2026 15:01               41446
fig4_ct_metabolite_network_v3.png                  16-Jul-2026 15:01             1134224
fig4_ct_metabolite_network_v4.pdf                  16-Jul-2026 15:01               57026
fig4_ct_metabolite_network_v4.png                  16-Jul-2026 15:01             1297622
fig5_auc_decomposition.pdf                         16-Jul-2026 15:01               29109
fig5_auc_decomposition.png                         16-Jul-2026 15:01              216141
fig5_feature_weights_v1.pdf                        16-Jul-2026 15:01               31143
fig5_feature_weights_v1.png                        16-Jul-2026 15:01              354279
fig5_germination_prediction_v3.pdf                 16-Jul-2026 15:01               22453
fig5_germination_prediction_v3.png                 16-Jul-2026 15:01              151266
fig5_germination_prediction_v4.pdf                 16-Jul-2026 15:01               23584
fig5_germination_prediction_v4.png                 16-Jul-2026 15:01              430711
fig5_germination_prediction_v5.pdf                 16-Jul-2026 15:01               34962
fig5_germination_prediction_v5.png                 16-Jul-2026 15:01              450749
fig5_mfca_comparison_v1.pdf                        16-Jul-2026 15:01               27179
fig5_mfca_comparison_v1.png                        16-Jul-2026 15:01              158649
fig5_mfca_dashboard.html                           16-Jul-2026 15:01                9707
fig5_model_auc_comparison_v1.pdf                   16-Jul-2026 15:01               30310
fig5_model_auc_comparison_v1.png                   16-Jul-2026 15:01              192482
fig5_model_auc_comparison_v2.pdf                   16-Jul-2026 15:01               30310
fig5_model_auc_comparison_v2.png                   16-Jul-2026 15:01              192482
fig5_roc_data.json                                 16-Jul-2026 15:01                1649
fig6_mechanistic_model_v1.pdf                      16-Jul-2026 15:01               45579
fig6_mechanistic_model_v1.png                      16-Jul-2026 15:01              199171
fig6_mechanistic_model_v3.pdf                      16-Jul-2026 15:01              130133
fig6_mechanistic_model_v3.png                      16-Jul-2026 15:01              742828
fig6_mechanistic_model_v3.svg                      16-Jul-2026 15:01               11579
fig6_mechanistic_model_v4.pdf                      16-Jul-2026 15:01              131255
fig6_mechanistic_model_v4.png                      16-Jul-2026 15:01              909453
fig6_mechanistic_model_v4.svg                      16-Jul-2026 15:01               11585
figS3_network_v2.pdf                               16-Jul-2026 15:01               34612
figS3_network_v2.png                               16-Jul-2026 15:01              564014
figS4_network_full_v1.pdf                          16-Jul-2026 15:01               22527
figS4_network_full_v1.png                          16-Jul-2026 15:01              258683
figS4_network_full_v2.png                          16-Jul-2026 15:01              301501
figS5_timepoint_cv_v1.pdf                          16-Jul-2026 15:01               47697
figS5_timepoint_cv_v1.png                          16-Jul-2026 15:01              342273
figS5_timepoint_cv_v2.pdf                          16-Jul-2026 15:01               37006
figS5_timepoint_cv_v2.png                          16-Jul-2026 15:01              552765
figS5_timepoint_cv_v3.pdf                          16-Jul-2026 15:01               37026
figS5_timepoint_cv_v3.png                          16-Jul-2026 15:01              546485
figS5_timepoint_loo_v1.pdf                         16-Jul-2026 15:01               28435
figS5_timepoint_loo_v1.png                         16-Jul-2026 15:01              167273
figS5_timepoint_loo_v2.pdf                         16-Jul-2026 15:01               34243
figS5_timepoint_loo_v2.png                         16-Jul-2026 15:01              311704
figSNP_overview.pdf                                16-Jul-2026 15:01               52487
figSNP_overview.png                                16-Jul-2026 15:01              229186
figSNP_overview_v2.png                             16-Jul-2026 15:01              335067
figS_selection_scan_v2.pdf                         16-Jul-2026 15:01              150263
figS_selection_scan_v2.png                         16-Jul-2026 15:01              564768
figS_selection_scan_v3.pdf                         16-Jul-2026 15:01              354615
figS_selection_scan_v3.png                         16-Jul-2026 15:01             1191987
pbj_v14_references.bib                             16-Jul-2026 15:01               12613
roadmap_compact.png                                16-Jul-2026 15:01              111937
roadmap_compact.svg                                16-Jul-2026 15:01                8932
roadmap_compact_center.png                         16-Jul-2026 15:01              753894
roadmap_compact_center.svg                         16-Jul-2026 15:01               10873
roadmap_compact_center_embedded.svg                16-Jul-2026 15:01              116474
roadmap_compact_embedded.svg                       16-Jul-2026 15:01              114507
roadmap_compact_preview.png                        16-Jul-2026 15:01              275310
roadmap_final.png                                  16-Jul-2026 15:01              778116
roadmap_merged.png                                 16-Jul-2026 15:01              119719
roadmap_merged.svg                                 16-Jul-2026 15:01               10738
roadmap_merged_center.png                          16-Jul-2026 15:01              114466
roadmap_merged_center.svg                          16-Jul-2026 15:01               11022
roadmap_merged_center_embedded.svg                 16-Jul-2026 15:01              116597
roadmap_merged_center_final.png                    16-Jul-2026 15:01              945043
roadmap_v2.png                                     16-Jul-2026 15:01              113473
roadmap_v2.svg                                     16-Jul-2026 15:01               22222
roadmap_v3.png                                     16-Jul-2026 15:01              145650
roadmap_v3.svg                                     16-Jul-2026 15:01               14957
roadmap_v4.svg                                     16-Jul-2026 15:01                9669